HDMF
stable
Getting Started
Installing HDMF
Tutorials
Overview
Introduction
Software Architecture
Citing HDMF
Resources
API Documentation
Extending Standards
Building API Classes
Export
Validating HDMF Data
Support for the HDMF Specification Language
For Developers
Installing HDMF for Developers
Contributing Guide
How to Make a Roundtrip Test
Software Process
For Maintainers
How to Make a Release
How to Update Requirements Files
Legal
Copyright
License
HDMF
Index
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Index
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E
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T
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V
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W
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Y
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__getitem__ (hdmf.region.RegionSlicer property)
__getitem__() (hdmf.array.Array method)
(hdmf.backends.hdf5.h5_utils.AbstractH5ReferenceDataset method)
(hdmf.backends.hdf5.h5_utils.AbstractH5RegionDataset method)
(hdmf.backends.hdf5.h5_utils.AbstractH5TableDataset method)
(hdmf.backends.hdf5.h5_utils.H5RegionSlicer method)
(hdmf.build.builders.GroupBuilder method)
(hdmf.common.alignedtable.AlignedDynamicTable method)
(hdmf.common.multi.SimpleMultiContainer method)
(hdmf.common.table.DynamicTable method)
(hdmf.common.table.DynamicTableRegion method)
(hdmf.common.table.EnumData method)
(hdmf.common.table.VectorIndex method)
(hdmf.container.Data method)
(hdmf.container.RowGetter method)
(hdmf.container.Table method)
(hdmf.data_utils.DataIO method)
(hdmf.query.HDMFDataset method)
(hdmf.region.ListSlicer method)
(hdmf.term_set.TermSet method)
(hdmf.term_set.TermSetWrapper method)
(hdmf.utils.LabelledDict method)
(hdmf.utils.StrDataset method)
__iter__() (hdmf.data_utils.AbstractDataChunkIterator method)
__len__ (hdmf.region.RegionSlicer property)
__next__() (hdmf.data_utils.AbstractDataChunkIterator method)
_get_data() (hdmf.data_utils.GenericDataChunkIterator method)
_get_dtype() (hdmf.data_utils.GenericDataChunkIterator method)
_get_maxshape() (hdmf.data_utils.GenericDataChunkIterator method)
A
AbstractContainer (class in hdmf.container)
AbstractDataChunkIterator (class in hdmf.data_utils)
AbstractH5ReferenceDataset (class in hdmf.backends.hdf5.h5_utils)
AbstractH5RegionDataset (class in hdmf.backends.hdf5.h5_utils)
AbstractH5TableDataset (class in hdmf.backends.hdf5.h5_utils)
AbstractSortedArray (class in hdmf.array)
add() (hdmf.utils.LabelledDict method)
(hdmf.validate.validator.SpecMatches method)
add_attribute() (hdmf.spec.spec.BaseStorageSpec method)
add_candidate() (hdmf.build.manager.Proxy method)
add_category() (hdmf.common.alignedtable.AlignedDynamicTable method)
add_child() (hdmf.container.AbstractContainer method)
add_column() (hdmf.common.alignedtable.AlignedDynamicTable method)
(hdmf.common.table.DynamicTable method)
add_container() (hdmf.common.multi.SimpleMultiContainer method)
add_dataset() (hdmf.spec.spec.GroupSpec method)
add_group() (hdmf.spec.spec.GroupSpec method)
add_link() (hdmf.spec.spec.GroupSpec method)
add_namespace() (hdmf.spec.namespace.NamespaceCatalog method)
add_ref() (hdmf.common.resources.HERD method)
add_ref_container() (hdmf.common.resources.HERD method)
add_ref_termset() (hdmf.common.resources.HERD method)
add_row() (hdmf.common.alignedtable.AlignedDynamicTable method)
(hdmf.common.resources.EntityKeyTable method)
(hdmf.common.resources.EntityTable method)
(hdmf.common.resources.FileTable method)
(hdmf.common.resources.KeyTable method)
(hdmf.common.resources.ObjectKeyTable method)
(hdmf.common.resources.ObjectTable method)
(hdmf.common.table.DynamicTable method)
(hdmf.common.table.EnumData method)
(hdmf.common.table.VectorData method)
(hdmf.common.table.VectorIndex method)
(hdmf.container.Table method)
add_source() (hdmf.spec.write.NamespaceBuilder method)
add_spec() (hdmf.spec.write.NamespaceBuilder method)
(hdmf.spec.write.SpecFileBuilder method)
add_vector() (hdmf.common.table.VectorIndex method)
AlignedDynamicTable (class in hdmf.common.alignedtable)
AlignedDynamicTableMap (class in hdmf.common.io.alignedtable)
all_children() (hdmf.container.AbstractContainer method)
all_objects (hdmf.container.AbstractContainer property)
ALLOWED (hdmf.utils.AllowPositional attribute)
AllowPositional (class in hdmf.utils)
append() (hdmf.backends.hdf5.h5_utils.HDF5IODataChunkIteratorQueue method)
(hdmf.container.Data method)
(hdmf.data_utils.DataIO method)
(hdmf.term_set.TermSetWrapper method)
append_data() (in module hdmf.data_utils)
apply_generator_to_field() (hdmf.build.classgenerator.CustomClassGenerator class method)
(hdmf.build.classgenerator.MCIClassGenerator class method)
(hdmf.common.io.table.DynamicTableGenerator class method)
Array (class in hdmf.array)
assert_external_resources_equal() (hdmf.common.resources.HERD static method)
assertBuilderEqual() (hdmf.testing.testcase.TestCase method)
assertContainerEqual() (hdmf.testing.testcase.TestCase method)
assertEqualShape() (in module hdmf.data_utils)
assertRaisesWith() (hdmf.testing.testcase.TestCase method)
assertValidDtype() (hdmf.spec.spec.DtypeSpec static method)
assertWarnsWith() (hdmf.testing.testcase.TestCase method)
assign_to_specs() (hdmf.validate.validator.SpecMatcher method)
astype() (hdmf.data_utils.DataChunk method)
attr_columns() (hdmf.common.io.table.DynamicTableMap method)
attributes (hdmf.build.builders.BaseBuilder property)
(hdmf.spec.spec.BaseStorageSpec property)
AttributeSpec (class in hdmf.spec.spec)
AttributeValidator (class in hdmf.validate.validator)
author (hdmf.spec.namespace.SpecNamespace property)
auto_register() (hdmf.spec.catalog.SpecCatalog method)
available_namespaces() (in module hdmf.common)
B
BaseBuilder (class in hdmf.build.builders)
BaseStorageSpec (class in hdmf.spec.spec)
BaseStorageValidator (class in hdmf.validate.validator)
BrokenLinkWarning
build() (hdmf.build.manager.BuildManager method)
(hdmf.build.manager.TypeMap method)
(hdmf.build.objectmapper.ObjectMapper method)
build_const_args() (hdmf.spec.spec.AttributeSpec class method)
(hdmf.spec.spec.BaseStorageSpec class method)
(hdmf.spec.spec.ConstructableDict class method)
(hdmf.spec.spec.DatasetSpec class method)
(hdmf.spec.spec.DtypeSpec class method)
(hdmf.spec.spec.GroupSpec class method)
(hdmf.spec.spec.Spec class method)
build_namespace() (hdmf.spec.namespace.SpecNamespace class method)
build_spec() (hdmf.spec.spec.ConstructableDict class method)
Builder (class in hdmf.build.builders)
builder (hdmf.build.builders.LinkBuilder property)
(hdmf.build.builders.ReferenceBuilder property)
BuilderH5ReferenceDataset (class in hdmf.backends.hdf5.h5_utils)
BuilderH5RegionDataset (class in hdmf.backends.hdf5.h5_utils)
BuilderH5TableDataset (class in hdmf.backends.hdf5.h5_utils)
BuilderResolver (class in hdmf.query)
BuilderResolverMixin (class in hdmf.backends.hdf5.h5_utils)
BuildError
BuildManager (class in hdmf.build.manager)
BuildWarning
C
call_docval_func() (in module hdmf.utils)
can_read() (hdmf.backends.hdf5.h5tools.HDF5IO static method)
(hdmf.backends.io.HDMFIO static method)
catalog (hdmf.spec.namespace.SpecNamespace property)
categories (hdmf.common.alignedtable.AlignedDynamicTable property)
category_tables (hdmf.common.alignedtable.AlignedDynamicTable property)
check_dtype() (hdmf.spec.spec.DtypeHelper static method)
check_shape() (in module hdmf.validate.validator)
check_type() (in module hdmf.utils)
(in module hdmf.validate.validator)
check_valid_dtype() (hdmf.spec.spec.DtypeSpec static method)
children (hdmf.container.AbstractContainer property)
chunks (hdmf.build.builders.DatasetBuilder property)
ClassGenerator (class in hdmf.build.classgenerator)
clear() (hdmf.utils.LabelledDict method)
clear_cache() (hdmf.build.manager.BuildManager method)
close() (hdmf.backends.hdf5.h5tools.HDF5IO method)
(hdmf.backends.io.HDMFIO method)
close_linked_files() (hdmf.backends.hdf5.h5tools.HDF5IO method)
colnames (hdmf.common.table.DynamicTable property)
columns (hdmf.common.table.DynamicTable property)
(hdmf.container.Table property)
comm (hdmf.backends.hdf5.h5tools.HDF5IO property)
compute_final_result() (hdmf.monitor.DataChunkProcessor method)
(hdmf.monitor.NumSampleCounter method)
construct() (hdmf.build.manager.BuildManager method)
(hdmf.build.manager.TypeMap method)
(hdmf.build.objectmapper.ObjectMapper method)
construct_helper() (hdmf.common.io.resources.HERDMap method)
ConstructableDict (class in hdmf.spec.spec)
ConstructError
constructor_arg() (hdmf.build.objectmapper.ObjectMapper static method)
constructor_args (hdmf.build.objectmapper.ObjectMapper attribute)
(hdmf.common.io.alignedtable.AlignedDynamicTableMap attribute)
(hdmf.common.io.multi.SimpleMultiContainerMap attribute)
(hdmf.common.io.resources.HERDMap attribute)
(hdmf.common.io.table.DynamicTableMap attribute)
contact (hdmf.spec.namespace.SpecNamespace property)
Container (class in hdmf.container)
container_source (hdmf.container.AbstractContainer property)
container_types (hdmf.build.manager.TypeMap property)
ContainerConfigurationError
ContainerH5ReferenceDataset (class in hdmf.backends.hdf5.h5_utils)
ContainerH5RegionDataset (class in hdmf.backends.hdf5.h5_utils)
ContainerH5TableDataset (class in hdmf.backends.hdf5.h5_utils)
ContainerResolver (class in hdmf.query)
ContainerResolverMixin (class in hdmf.backends.hdf5.h5_utils)
containers (hdmf.common.multi.SimpleMultiContainer property)
containers_attr() (hdmf.common.io.multi.SimpleMultiContainerMap method)
containers_carg() (hdmf.common.io.multi.SimpleMultiContainerMap method)
convert_dt_name() (hdmf.build.objectmapper.ObjectMapper class method)
convert_dtype() (hdmf.build.objectmapper.ObjectMapper class method)
convert_namespace() (hdmf.backends.utils.NamespaceToBuilderHelper class method)
copy() (hdmf.common.table.DynamicTable method)
copy_file() (hdmf.backends.hdf5.h5tools.HDF5IO class method)
copy_mappers() (hdmf.build.manager.TypeMap method)
create_region() (hdmf.common.table.DynamicTable method)
CSRMatrix (class in hdmf.common.sparse)
css_style (hdmf.container.Container property)
custom_generators (hdmf.build.classgenerator.ClassGenerator property)
CustomClassGenerator (class in hdmf.build.classgenerator)
D
Data (class in hdmf.container)
data (hdmf.array.Array property)
(hdmf.build.builders.DatasetBuilder property)
(hdmf.container.Data property)
(hdmf.container.DataRegion property)
(hdmf.data_utils.DataIO property)
(hdmf.region.RegionSlicer property)
data_type (hdmf.build.manager.Proxy property)
(hdmf.build.manager.TypeSource property)
(hdmf.common.alignedtable.AlignedDynamicTable attribute)
(hdmf.common.multi.SimpleMultiContainer attribute)
(hdmf.common.resources.HERD attribute)
(hdmf.common.sparse.CSRMatrix attribute)
(hdmf.common.table.DynamicTable attribute)
(hdmf.common.table.DynamicTableRegion attribute)
(hdmf.common.table.ElementIdentifiers attribute)
(hdmf.common.table.EnumData attribute)
(hdmf.common.table.VectorData attribute)
(hdmf.common.table.VectorIndex attribute)
(hdmf.container.Container attribute)
(hdmf.container.Data attribute)
(hdmf.spec.spec.BaseStorageSpec property)
(hdmf.validate.errors.MissingDataType property)
data_type_def (hdmf.spec.spec.BaseStorageSpec property)
data_type_inc (hdmf.spec.spec.BaseStorageSpec property)
(hdmf.spec.spec.LinkSpec property)
DataChunk (class in hdmf.data_utils)
DataChunkIterator (class in hdmf.data_utils)
DataChunkProcessor (class in hdmf.monitor)
DataIO (class in hdmf.data_utils)
DataRegion (class in hdmf.container)
datas_attr() (hdmf.common.io.multi.SimpleMultiContainerMap method)
dataset (hdmf.backends.hdf5.h5_utils.H5DataIO property)
(hdmf.query.HDMFDataset property)
dataset_spec_cls (hdmf.spec.namespace.NamespaceCatalog property)
dataset_spec_cls() (hdmf.spec.spec.GroupSpec class method)
DatasetBuilder (class in hdmf.build.builders)
DatasetOfReferences (class in hdmf.backends.hdf5.h5_utils)
datasets (hdmf.build.builders.GroupBuilder property)
(hdmf.spec.spec.GroupSpec property)
DatasetSpec (class in hdmf.spec.spec)
DatasetValidator (class in hdmf.validate.validator)
date (hdmf.spec.namespace.SpecNamespace property)
def_key() (hdmf.spec.spec.BaseStorageSpec class method)
default_name (hdmf.spec.spec.BaseStorageSpec property)
default_value (hdmf.spec.spec.AttributeSpec property)
(hdmf.spec.spec.DatasetSpec property)
description (hdmf.common.table.DynamicTable property)
(hdmf.common.table.VectorData property)
dims (hdmf.spec.spec.AttributeSpec property)
(hdmf.spec.spec.DatasetSpec property)
doc (hdmf.spec.namespace.SpecNamespace property)
(hdmf.spec.spec.DtypeSpec property)
(hdmf.spec.spec.Spec property)
docval() (in module hdmf.utils)
docval_macro() (in module hdmf.utils)
driver (hdmf.backends.hdf5.h5tools.HDF5IO property)
drop_id_columns() (in module hdmf.common.hierarchicaltable)
dtype (hdmf.backends.hdf5.h5_utils.AbstractH5ReferenceDataset property)
(hdmf.backends.hdf5.h5_utils.AbstractH5RegionDataset property)
(hdmf.backends.hdf5.h5_utils.AbstractH5TableDataset property)
(hdmf.build.builders.DatasetBuilder property)
(hdmf.data_utils.AbstractDataChunkIterator property)
(hdmf.data_utils.DataChunk property)
(hdmf.data_utils.DataChunkIterator property)
(hdmf.data_utils.DataIO property)
(hdmf.data_utils.GenericDataChunkIterator property)
(hdmf.query.HDMFDataset property)
(hdmf.spec.spec.AttributeSpec property)
(hdmf.spec.spec.DatasetSpec property)
(hdmf.spec.spec.DtypeSpec property)
(hdmf.term_set.TermSetWrapper property)
dtype_spec_cls() (hdmf.spec.spec.DatasetSpec class method)
DtypeConversionWarning
DtypeError (class in hdmf.validate.errors)
DtypeHelper (class in hdmf.spec.spec)
DtypeSpec (class in hdmf.spec.spec)
DynamicTable (class in hdmf.common.table)
DynamicTableGenerator (class in hdmf.common.io.table)
DynamicTableMap (class in hdmf.common.io.table)
DynamicTableRegion (class in hdmf.common.table)
E
ElementIdentifiers (class in hdmf.common.table)
elements (hdmf.common.table.EnumData property)
EmptyArrayError
entities (hdmf.common.resources.HERD property)
entities() (hdmf.common.io.resources.HERDMap method)
Entity (class in hdmf.common.resources)
entity_keys (hdmf.common.resources.HERD property)
entity_keys() (hdmf.common.io.resources.HERDMap method)
EntityKey (class in hdmf.common.resources)
EntityKeyTable (class in hdmf.common.resources)
EntityTable (class in hdmf.common.resources)
EnumData (class in hdmf.common.table)
Error (class in hdmf.validate.errors)
ERROR (hdmf.utils.AllowPositional attribute)
evaluate() (hdmf.query.Query method)
exhaust_queue() (hdmf.backends.hdf5.h5_utils.HDF5IODataChunkIteratorQueue method)
ExpectedArrayError (class in hdmf.validate.errors)
export() (hdmf.backends.hdf5.h5tools.HDF5IO method)
(hdmf.backends.io.HDMFIO method)
(hdmf.spec.write.NamespaceBuilder method)
export_io() (hdmf.backends.hdf5.h5tools.HDF5IO class method)
export_spec() (in module hdmf.spec.write)
extend() (hdmf.common.table.VectorData method)
(hdmf.container.Data method)
(hdmf.data_utils.DataIO method)
(hdmf.term_set.TermSetWrapper method)
extend_data() (in module hdmf.data_utils)
ExtenderMeta (class in hdmf.utils)
F
fields (hdmf.container.AbstractContainer property)
File (class in hdmf.common.resources)
files (hdmf.common.resources.HERD property)
files() (hdmf.common.io.resources.HERDMap method)
FileTable (class in hdmf.common.resources)
filter_available() (hdmf.backends.hdf5.h5_utils.H5DataIO static method)
find_point() (hdmf.array.AbstractSortedArray method)
(hdmf.array.LinSpace method)
(hdmf.array.SortedArray method)
flatten_column_index() (in module hdmf.common.hierarchicaltable)
fmt_docval_args() (in module hdmf.utils)
from_dataframe() (hdmf.common.table.DynamicTable class method)
(hdmf.container.Table class method)
from_iterable() (hdmf.data_utils.DataChunkIterator class method)
from_zip() (hdmf.common.resources.HERD class method)
full_name (hdmf.spec.namespace.SpecNamespace property)
G
generate_class() (hdmf.build.classgenerator.ClassGenerator method)
generate_html_repr() (hdmf.common.table.DynamicTable method)
generate_new_id() (hdmf.container.AbstractContainer method)
GenericDataChunkIterator (class in hdmf.data_utils)
get() (hdmf.build.builders.GroupBuilder method)
(hdmf.common.alignedtable.AlignedDynamicTable method)
(hdmf.common.table.DynamicTable method)
(hdmf.common.table.DynamicTableRegion method)
(hdmf.common.table.EnumData method)
(hdmf.common.table.VectorData method)
(hdmf.common.table.VectorIndex method)
(hdmf.container.Data method)
get_ancestor() (hdmf.container.AbstractContainer method)
get_ancestors() (hdmf.container.AbstractContainer method)
get_attr_names() (hdmf.build.objectmapper.ObjectMapper class method)
get_attr_spec() (hdmf.build.objectmapper.ObjectMapper method)
get_attr_value() (hdmf.build.objectmapper.ObjectMapper method)
(hdmf.common.io.table.DynamicTableMap method)
get_attribute() (hdmf.build.objectmapper.ObjectMapper method)
(hdmf.spec.spec.BaseStorageSpec method)
get_builder() (hdmf.backends.hdf5.h5tools.HDF5IO method)
(hdmf.build.manager.BuildManager method)
get_builder_dt() (hdmf.build.manager.BuildManager method)
(hdmf.build.manager.TypeMap method)
get_builder_loc() (hdmf.validate.validator.Validator class method)
get_builder_name() (hdmf.build.manager.BuildManager method)
(hdmf.build.manager.TypeMap method)
(hdmf.build.objectmapper.ObjectMapper method)
get_builder_ns() (hdmf.build.manager.BuildManager method)
(hdmf.build.manager.TypeMap method)
get_carg_spec() (hdmf.build.objectmapper.ObjectMapper method)
get_category() (hdmf.common.alignedtable.AlignedDynamicTable method)
get_class() (in module hdmf.common)
get_cls() (hdmf.build.manager.BuildManager method)
(hdmf.build.manager.TypeMap method)
get_colnames() (hdmf.common.alignedtable.AlignedDynamicTable method)
get_const_arg() (hdmf.build.objectmapper.ObjectMapper method)
get_container() (hdmf.backends.hdf5.h5tools.HDF5IO method)
(hdmf.common.multi.SimpleMultiContainer method)
get_container_classes() (hdmf.build.manager.TypeMap method)
get_container_cls() (hdmf.build.manager.TypeMap method)
get_container_cls_dt() (hdmf.build.manager.TypeMap method)
get_container_name() (hdmf.build.objectmapper.ObjectMapper method)
get_container_ns_dt() (hdmf.build.manager.TypeMap method)
get_data() (hdmf.array.AbstractSortedArray method)
(hdmf.array.Array method)
get_data_shape() (in module hdmf.utils)
get_data_type() (hdmf.spec.spec.GroupSpec method)
get_data_type_spec() (hdmf.spec.spec.BaseStorageSpec class method)
get_dataset() (hdmf.spec.spec.GroupSpec method)
get_docval() (in module hdmf.utils)
get_docval_macro() (in module hdmf.utils)
get_dt_container_cls() (hdmf.build.manager.TypeMap method)
get_entity() (hdmf.common.resources.HERD method)
get_fields_conf() (hdmf.container.AbstractContainer class method)
get_final_result() (hdmf.monitor.DataChunkProcessor method)
get_foreign_columns() (hdmf.common.alignedtable.AlignedDynamicTable method)
(hdmf.common.table.DynamicTable method)
get_full_hierarchy() (hdmf.spec.catalog.SpecCatalog method)
get_group() (hdmf.spec.spec.GroupSpec method)
get_hdf5io() (in module hdmf.common)
get_hierarchy() (hdmf.spec.catalog.SpecCatalog method)
(hdmf.spec.namespace.NamespaceCatalog method)
(hdmf.spec.namespace.SpecNamespace method)
get_inverse_class() (hdmf.backends.hdf5.h5_utils.BuilderH5ReferenceDataset class method)
(hdmf.backends.hdf5.h5_utils.BuilderH5RegionDataset class method)
(hdmf.backends.hdf5.h5_utils.BuilderH5TableDataset class method)
(hdmf.backends.hdf5.h5_utils.ContainerH5ReferenceDataset class method)
(hdmf.backends.hdf5.h5_utils.ContainerH5RegionDataset class method)
(hdmf.backends.hdf5.h5_utils.ContainerH5TableDataset class method)
(hdmf.query.ReferenceResolver class method)
get_io_params() (hdmf.backends.hdf5.h5_utils.H5DataIO method)
(hdmf.data_utils.DataIO method)
get_iso8601_regex() (in module hdmf.validate.validator)
get_key() (hdmf.common.resources.HERD method)
get_link() (hdmf.spec.spec.GroupSpec method)
get_linked_resources() (hdmf.container.HERDManager method)
get_linked_tables() (hdmf.common.alignedtable.AlignedDynamicTable method)
(hdmf.common.table.DynamicTable method)
get_manager() (in module hdmf.common)
get_map() (hdmf.build.manager.TypeMap method)
get_min_bounds() (hdmf.data_utils.DataChunk method)
get_namespace() (hdmf.spec.namespace.NamespaceCatalog method)
get_namespace_sources() (hdmf.spec.namespace.NamespaceCatalog method)
get_namespace_spec() (hdmf.spec.spec.BaseStorageSpec class method)
get_namespaces() (hdmf.backends.hdf5.h5tools.HDF5IO class method)
get_object() (hdmf.backends.hdf5.h5_utils.BuilderResolverMixin method)
(hdmf.backends.hdf5.h5_utils.ContainerResolverMixin method)
(hdmf.backends.hdf5.h5_utils.DatasetOfReferences method)
get_object_entities() (hdmf.common.resources.HERD method)
get_object_type() (hdmf.common.resources.HERD method)
get_proxy() (hdmf.build.manager.BuildManager method)
get_read_io() (hdmf.container.AbstractContainer method)
get_region_slicer() (in module hdmf)
get_registered_types() (hdmf.spec.catalog.SpecCatalog method)
(hdmf.spec.namespace.SpecNamespace method)
get_source_description() (hdmf.spec.namespace.SpecNamespace method)
get_source_files() (hdmf.spec.namespace.SpecNamespace method)
get_source_name() (hdmf.backends.utils.NamespaceToBuilderHelper class method)
get_sources() (hdmf.spec.namespace.NamespaceCatalog method)
get_spec() (hdmf.spec.catalog.SpecCatalog method)
(hdmf.spec.namespace.NamespaceCatalog method)
(hdmf.spec.namespace.SpecNamespace method)
get_spec_loc() (hdmf.validate.validator.Validator class method)
get_spec_source_file() (hdmf.spec.catalog.SpecCatalog method)
get_string_format() (in module hdmf.validate.validator)
get_subspec() (hdmf.build.manager.BuildManager method)
(hdmf.build.manager.TypeMap method)
get_subtypes() (hdmf.spec.catalog.SpecCatalog method)
get_target_type() (hdmf.spec.spec.GroupSpec method)
get_type() (hdmf.backends.hdf5.h5tools.HDF5IO class method)
(in module hdmf.validate.validator)
get_type_map() (in module hdmf.common)
get_types() (hdmf.spec.namespace.NamespaceCatalog method)
get_validator() (hdmf.validate.validator.ValidatorMap method)
get_written() (hdmf.backends.hdf5.h5tools.HDF5IO method)
(hdmf.backends.utils.WriteStatusTracker method)
get_zip_directory() (hdmf.common.resources.HERD class method)
getargs() (in module hdmf.utils)
group_spec_cls (hdmf.spec.namespace.NamespaceCatalog property)
GroupBuilder (class in hdmf.build.builders)
groups (hdmf.build.builders.GroupBuilder property)
(hdmf.spec.spec.GroupSpec property)
GroupSpec (class in hdmf.spec.spec)
GroupValidator (class in hdmf.validate.validator)
H
H5DataIO (class in hdmf.backends.hdf5.h5_utils)
H5Dataset (class in hdmf.backends.hdf5.h5_utils)
H5RegionSlicer (class in hdmf.backends.hdf5.h5_utils)
H5RoundTripMixin (class in hdmf.testing.testcase)
H5SpecReader (class in hdmf.backends.hdf5.h5_utils)
H5SpecWriter (class in hdmf.backends.hdf5.h5_utils)
has_foreign_columns() (hdmf.common.alignedtable.AlignedDynamicTable method)
(hdmf.common.table.DynamicTable method)
HDF5IO (class in hdmf.backends.hdf5.h5tools)
HDF5IODataChunkIteratorQueue (class in hdmf.backends.hdf5.h5_utils)
hdmf
module
hdmf.array
module
hdmf.backends
module
hdmf.backends.errors
module
hdmf.backends.hdf5
module
hdmf.backends.hdf5.h5_utils
module
hdmf.backends.hdf5.h5tools
module
hdmf.backends.io
module
hdmf.backends.utils
module
hdmf.backends.warnings
module
hdmf.build
module
hdmf.build.builders
module
hdmf.build.classgenerator
module
hdmf.build.errors
module
hdmf.build.manager
module
hdmf.build.map
module
hdmf.build.objectmapper
module
hdmf.build.warnings
module
hdmf.common
module
hdmf.common.alignedtable
module
hdmf.common.hierarchicaltable
module
hdmf.common.io
module
hdmf.common.io.alignedtable
module
hdmf.common.io.multi
module
hdmf.common.io.resources
module
hdmf.common.io.table
module
hdmf.common.multi
module
hdmf.common.resources
module
hdmf.common.sparse
module
hdmf.common.table
module
hdmf.container
module
hdmf.data_utils
module
hdmf.monitor
module
hdmf.query
module
hdmf.region
module
hdmf.spec
module
hdmf.spec.catalog
module
hdmf.spec.namespace
module
hdmf.spec.spec
module
hdmf.spec.write
module
hdmf.term_set
module
hdmf.testing
module
hdmf.testing.testcase
module
hdmf.testing.utils
module
hdmf.testing.validate_spec
module
hdmf.utils
module
hdmf.validate
module
hdmf.validate.errors
module
hdmf.validate.validator
module
HDMFDataset (class in hdmf.query)
HDMFIO (class in hdmf.backends.io)
HERD (class in hdmf.common.resources)
HERDManager (class in hdmf.container)
HERDMap (class in hdmf.common.io.resources)
I
id (hdmf.common.table.DynamicTable property)
id_key() (hdmf.spec.spec.BaseStorageSpec class method)
idx (hdmf.container.Row property)
IllegalLinkError (class in hdmf.validate.errors)
inc_key() (hdmf.spec.spec.BaseStorageSpec class method)
include_namespace() (hdmf.spec.write.NamespaceBuilder method)
include_type() (hdmf.spec.write.NamespaceBuilder method)
IncorrectDataType (class in hdmf.validate.errors)
IncorrectQuantityBuildWarning
IncorrectQuantityError (class in hdmf.validate.errors)
InvalidDataIOError
invert() (hdmf.backends.hdf5.h5_utils.DatasetOfReferences method)
(hdmf.query.ReferenceResolver method)
io (hdmf.backends.hdf5.h5_utils.H5Dataset property)
io_settings (hdmf.backends.hdf5.h5_utils.H5DataIO property)
is_empty() (hdmf.build.builders.GroupBuilder method)
is_inherited_attribute() (hdmf.spec.spec.BaseStorageSpec method)
is_inherited_dataset() (hdmf.spec.spec.GroupSpec method)
is_inherited_group() (hdmf.spec.spec.GroupSpec method)
is_inherited_link() (hdmf.spec.spec.GroupSpec method)
is_inherited_spec() (hdmf.spec.spec.BaseStorageSpec method)
(hdmf.spec.spec.GroupSpec method)
is_inherited_target_type() (hdmf.spec.spec.GroupSpec method)
is_inherited_type() (hdmf.spec.spec.GroupSpec method)
is_many() (hdmf.spec.spec.BaseStorageSpec method)
(hdmf.spec.spec.LinkSpec method)
is_overridden_attribute() (hdmf.spec.spec.BaseStorageSpec method)
is_overridden_dataset() (hdmf.spec.spec.GroupSpec method)
is_overridden_group() (hdmf.spec.spec.GroupSpec method)
is_overridden_link() (hdmf.spec.spec.GroupSpec method)
is_overridden_spec() (hdmf.spec.spec.BaseStorageSpec method)
(hdmf.spec.spec.GroupSpec method)
is_overridden_target_type() (hdmf.spec.spec.GroupSpec method)
is_overridden_type() (hdmf.spec.spec.GroupSpec method)
is_ragged() (in module hdmf.utils)
is_ref() (hdmf.spec.spec.DtypeSpec static method)
is_region() (hdmf.spec.spec.RefSpec method)
is_sub_data_type() (hdmf.build.manager.BuildManager method)
(hdmf.spec.namespace.NamespaceCatalog method)
items() (hdmf.build.builders.GroupBuilder method)
J
js_script (hdmf.container.Container property)
K
Key (class in hdmf.common.resources)
key_attr (hdmf.utils.LabelledDict property)
keys (hdmf.common.resources.HERD property)
keys() (hdmf.build.builders.GroupBuilder method)
(hdmf.common.io.resources.HERDMap method)
KeyTable (class in hdmf.common.resources)
L
label (hdmf.utils.LabelledDict property)
LabelledDict (class in hdmf.utils)
link_data (hdmf.backends.hdf5.h5_utils.H5DataIO property)
link_resources() (hdmf.container.HERDManager method)
link_spec_cls() (hdmf.spec.spec.GroupSpec class method)
linkable (hdmf.spec.spec.BaseStorageSpec property)
LinkBuilder (class in hdmf.build.builders)
links (hdmf.build.builders.GroupBuilder property)
(hdmf.spec.spec.GroupSpec property)
LinkSpec (class in hdmf.spec.spec)
LinSpace (class in hdmf.array)
ListSlicer (class in hdmf.region)
load_namespaces() (hdmf.backends.hdf5.h5tools.HDF5IO class method)
(hdmf.build.manager.TypeMap method)
(hdmf.spec.namespace.NamespaceCatalog method)
(in module hdmf.common)
location (hdmf.build.builders.BaseBuilder property)
(hdmf.build.manager.Proxy property)
(hdmf.validate.errors.Error property)
M
main() (in module hdmf.testing.validate_spec)
manager (hdmf.backends.io.HDMFIO property)
map_attr() (hdmf.build.objectmapper.ObjectMapper method)
map_const_arg() (hdmf.build.objectmapper.ObjectMapper method)
map_spec() (hdmf.build.objectmapper.ObjectMapper method)
matches() (hdmf.build.manager.Proxy method)
maxshape (hdmf.build.builders.DatasetBuilder property)
(hdmf.data_utils.AbstractDataChunkIterator property)
(hdmf.data_utils.DataChunkIterator property)
(hdmf.data_utils.GenericDataChunkIterator property)
MCIClassGenerator (class in hdmf.build.classgenerator)
merge() (hdmf.build.manager.TypeMap method)
(hdmf.spec.namespace.NamespaceCatalog method)
MissingDataType (class in hdmf.validate.errors)
MissingError (class in hdmf.validate.errors)
MissingRequiredBuildWarning
MissingRequiredWarning
mode (hdmf.backends.hdf5.h5tools.HDF5IO property)
modified (hdmf.container.AbstractContainer property)
module
hdmf
hdmf.array
hdmf.backends
hdmf.backends.errors
hdmf.backends.hdf5
hdmf.backends.hdf5.h5_utils
hdmf.backends.hdf5.h5tools
hdmf.backends.io
hdmf.backends.utils
hdmf.backends.warnings
hdmf.build
hdmf.build.builders
hdmf.build.classgenerator
hdmf.build.errors
hdmf.build.manager
hdmf.build.map
hdmf.build.objectmapper
hdmf.build.warnings
hdmf.common
hdmf.common.alignedtable
hdmf.common.hierarchicaltable
hdmf.common.io
hdmf.common.io.alignedtable
hdmf.common.io.multi
hdmf.common.io.resources
hdmf.common.io.table
hdmf.common.multi
hdmf.common.resources
hdmf.common.sparse
hdmf.common.table
hdmf.container
hdmf.data_utils
hdmf.monitor
hdmf.query
hdmf.region
hdmf.spec
hdmf.spec.catalog
hdmf.spec.namespace
hdmf.spec.spec
hdmf.spec.write
hdmf.term_set
hdmf.testing
hdmf.testing.testcase
hdmf.testing.utils
hdmf.testing.validate_spec
hdmf.utils
hdmf.validate
hdmf.validate.errors
hdmf.validate.validator
MultiContainerInterface (class in hdmf.container)
N
name (hdmf.build.builders.Builder property)
(hdmf.container.AbstractContainer property)
(hdmf.spec.namespace.SpecNamespace property)
(hdmf.spec.spec.DtypeSpec property)
(hdmf.spec.spec.Spec property)
(hdmf.spec.write.NamespaceBuilder property)
(hdmf.validate.errors.Error property)
namespace (hdmf.build.manager.Proxy property)
(hdmf.build.manager.TypeSource property)
(hdmf.common.alignedtable.AlignedDynamicTable attribute)
(hdmf.common.multi.SimpleMultiContainer attribute)
(hdmf.common.resources.HERD attribute)
(hdmf.common.sparse.CSRMatrix attribute)
(hdmf.common.table.DynamicTable attribute)
(hdmf.common.table.DynamicTableRegion attribute)
(hdmf.common.table.ElementIdentifiers attribute)
(hdmf.common.table.EnumData attribute)
(hdmf.common.table.VectorData attribute)
(hdmf.common.table.VectorIndex attribute)
(hdmf.container.Container attribute)
(hdmf.container.Data attribute)
(hdmf.validate.validator.ValidatorMap property)
namespace_catalog (hdmf.build.manager.BuildManager property)
(hdmf.build.manager.TypeMap property)
NamespaceBuilder (class in hdmf.spec.write)
NamespaceCatalog (class in hdmf.spec.namespace)
namespaces (hdmf.spec.namespace.NamespaceCatalog property)
NamespaceToBuilderHelper (class in hdmf.backends.utils)
next() (hdmf.data_utils.DataChunkIterator method)
(hdmf.query.HDMFDataset method)
no_convert() (hdmf.build.objectmapper.ObjectMapper class method)
NotYetExhausted
NumSampleCounter (class in hdmf.monitor)
O
obj_attrs (hdmf.build.objectmapper.ObjectMapper attribute)
(hdmf.common.io.alignedtable.AlignedDynamicTableMap attribute)
(hdmf.common.io.multi.SimpleMultiContainerMap attribute)
(hdmf.common.io.resources.HERDMap attribute)
(hdmf.common.io.table.DynamicTableMap attribute)
Object (class in hdmf.common.resources)
object_attr() (hdmf.build.objectmapper.ObjectMapper static method)
object_id (hdmf.container.AbstractContainer property)
object_keys (hdmf.common.resources.HERD property)
object_keys() (hdmf.common.io.resources.HERDMap method)
OBJECT_REF_TYPE (hdmf.build.builders.DatasetBuilder attribute)
ObjectKey (class in hdmf.common.resources)
ObjectKeyTable (class in hdmf.common.resources)
ObjectMapper (class in hdmf.build.objectmapper)
objects (hdmf.common.resources.HERD property)
objects() (hdmf.common.io.resources.HERDMap method)
ObjectTable (class in hdmf.common.resources)
open() (hdmf.backends.hdf5.h5tools.HDF5IO method)
(hdmf.backends.io.HDMFIO method)
OrphanContainerBuildError
OrphanContainerWarning
P
parent (hdmf.build.builders.Builder property)
(hdmf.container.AbstractContainer property)
(hdmf.spec.spec.Spec property)
path (hdmf.build.builders.Builder property)
(hdmf.spec.spec.Spec property)
pop() (hdmf.utils.LabelledDict method)
popargs() (in module hdmf.utils)
popargs_to_dict() (in module hdmf.utils)
popitem() (hdmf.utils.LabelledDict method)
post_init() (hdmf.utils.ExtenderMeta class method)
post_process() (hdmf.build.classgenerator.CustomClassGenerator class method)
(hdmf.build.classgenerator.MCIClassGenerator class method)
(hdmf.common.io.table.DynamicTableGenerator class method)
pre_init() (hdmf.utils.ExtenderMeta class method)
prebuilt() (hdmf.build.manager.BuildManager method)
primary_dtype_synonyms (hdmf.spec.spec.DtypeHelper attribute)
process_data_chunk() (hdmf.monitor.DataChunkProcessor method)
(hdmf.monitor.NumSampleCounter method)
process_field_spec() (hdmf.build.classgenerator.CustomClassGenerator class method)
(hdmf.build.classgenerator.MCIClassGenerator class method)
(hdmf.common.io.table.DynamicTableGenerator class method)
Proxy (class in hdmf.build.manager)
purge_outdated() (hdmf.build.manager.BuildManager method)
pystr() (in module hdmf.utils)
Q
quantity (hdmf.spec.spec.BaseStorageSpec property)
(hdmf.spec.spec.LinkSpec property)
Query (class in hdmf.query)
queue_ref() (hdmf.build.manager.BuildManager method)
R
read() (hdmf.backends.hdf5.h5tools.HDF5IO method)
(hdmf.backends.io.HDMFIO method)
read_builder() (hdmf.backends.hdf5.h5tools.HDF5IO method)
(hdmf.backends.io.HDMFIO method)
read_io (hdmf.container.AbstractContainer property)
read_namespace() (hdmf.backends.hdf5.h5_utils.H5SpecReader method)
(hdmf.spec.namespace.SpecReader method)
(hdmf.spec.namespace.YAMLSpecReader method)
read_spec() (hdmf.backends.hdf5.h5_utils.H5SpecReader method)
(hdmf.spec.namespace.SpecReader method)
(hdmf.spec.namespace.YAMLSpecReader method)
reason (hdmf.validate.errors.Error property)
recommended_chunk_shape() (hdmf.data_utils.AbstractDataChunkIterator method)
(hdmf.data_utils.DataChunkIterator method)
(hdmf.data_utils.GenericDataChunkIterator method)
(hdmf.monitor.DataChunkProcessor method)
recommended_data_shape() (hdmf.data_utils.AbstractDataChunkIterator method)
(hdmf.data_utils.DataChunkIterator method)
(hdmf.data_utils.GenericDataChunkIterator method)
(hdmf.monitor.DataChunkProcessor method)
recommended_primary_dtypes (hdmf.spec.spec.DtypeHelper attribute)
ref (hdmf.backends.hdf5.h5_utils.H5Dataset property)
ReferenceBuilder (class in hdmf.build.builders)
ReferenceResolver (class in hdmf.query)
ReferenceTargetNotBuiltError
RefSpec (class in hdmf.spec.spec)
reftype (hdmf.spec.spec.RefSpec property)
region (hdmf.build.builders.RegionBuilder property)
(hdmf.container.DataRegion property)
(hdmf.region.RegionSlicer property)
REGION_REF_TYPE (hdmf.build.builders.DatasetBuilder attribute)
RegionBuilder (class in hdmf.build.builders)
regionref (hdmf.backends.hdf5.h5_utils.H5Dataset property)
RegionSlicer (class in hdmf.region)
register_class() (in module hdmf.common)
register_container_type() (hdmf.build.manager.TypeMap method)
register_generator() (hdmf.build.classgenerator.ClassGenerator method)
(hdmf.build.manager.TypeMap method)
register_map() (hdmf.build.manager.TypeMap method)
(in module hdmf.common)
register_spec() (hdmf.spec.catalog.SpecCatalog method)
remove_test_file() (in module hdmf.testing.utils)
reorder_yaml() (hdmf.spec.write.YAMLSpecWriter method)
required (hdmf.spec.spec.AttributeSpec property)
(hdmf.spec.spec.BaseStorageSpec property)
(hdmf.spec.spec.LinkSpec property)
reset_parent() (hdmf.container.AbstractContainer method)
resolve() (hdmf.backends.hdf5.h5_utils.AbstractH5TableDataset method)
(hdmf.build.manager.Proxy method)
resolve_spec() (hdmf.spec.spec.BaseStorageSpec method)
(hdmf.spec.spec.DatasetSpec method)
(hdmf.spec.spec.GroupSpec method)
resolved (hdmf.spec.spec.BaseStorageSpec property)
roundtripContainer() (hdmf.testing.testcase.H5RoundTripMixin method)
roundtripExportContainer() (hdmf.testing.testcase.H5RoundTripMixin method)
Row (class in hdmf.container)
RowGetter (class in hdmf.container)
S
schema (hdmf.spec.namespace.SpecNamespace property)
set_attribute() (hdmf.build.builders.BaseBuilder method)
(hdmf.build.builders.GroupBuilder method)
(hdmf.spec.spec.BaseStorageSpec method)
set_attributes() (hdmf.backends.hdf5.h5tools.HDF5IO method)
set_data_io() (hdmf.container.Container method)
(hdmf.container.Data method)
set_dataio() (hdmf.backends.hdf5.h5tools.HDF5IO class method)
(hdmf.container.Data method)
set_dataset() (hdmf.build.builders.GroupBuilder method)
(hdmf.spec.spec.GroupSpec method)
set_group() (hdmf.build.builders.GroupBuilder method)
(hdmf.spec.spec.GroupSpec method)
set_init() (hdmf.build.classgenerator.CustomClassGenerator class method)
(hdmf.build.classgenerator.MCIClassGenerator class method)
set_link() (hdmf.build.builders.GroupBuilder method)
(hdmf.spec.spec.GroupSpec method)
set_modified() (hdmf.container.AbstractContainer method)
set_written() (hdmf.backends.utils.WriteStatusTracker method)
setdefault() (hdmf.utils.LabelledDict method)
setUp() (hdmf.testing.testcase.H5RoundTripMixin method)
setUpContainer() (hdmf.testing.testcase.H5RoundTripMixin method)
shape (hdmf.backends.hdf5.h5_utils.H5Dataset property)
(hdmf.common.table.DynamicTableRegion property)
(hdmf.container.Data property)
(hdmf.data_utils.DataIO property)
(hdmf.spec.spec.AttributeSpec property)
(hdmf.spec.spec.DatasetSpec property)
SHAPE_ERROR (hdmf.data_utils.ShapeValidatorResult attribute)
ShapeError (class in hdmf.validate.errors)
ShapeValidatorResult (class in hdmf.data_utils)
SimpleMultiContainer (class in hdmf.common.multi)
SimpleMultiContainerMap (class in hdmf.common.io.multi)
simplify_cpd_type() (hdmf.spec.spec.DtypeHelper static method)
slice (hdmf.region.RegionSlicer property)
sort_keys() (hdmf.spec.write.YAMLSpecWriter method)
SortedArray (class in hdmf.array)
source (hdmf.backends.io.HDMFIO property)
(hdmf.build.builders.Builder property)
(hdmf.build.builders.GroupBuilder property)
(hdmf.build.manager.Proxy property)
(hdmf.spec.namespace.SpecReader property)
Spec (class in hdmf.spec.spec)
spec (hdmf.build.objectmapper.ObjectMapper property)
(hdmf.validate.validator.Validator property)
spec_matches (hdmf.validate.validator.SpecMatcher property)
spec_namespace_cls (hdmf.spec.namespace.NamespaceCatalog property)
SpecCatalog (class in hdmf.spec.catalog)
SpecFileBuilder (class in hdmf.spec.write)
SpecMatcher (class in hdmf.validate.validator)
SpecMatches (class in hdmf.validate.validator)
SpecNamespace (class in hdmf.spec.namespace)
SpecReader (class in hdmf.spec.namespace)
SpecWriter (class in hdmf.spec.write)
StrDataset (class in hdmf.utils)
stringify() (hdmf.backends.hdf5.h5_utils.H5SpecWriter static method)
T
Table (class in hdmf.container)
table (hdmf.common.table.DynamicTableRegion property)
(hdmf.container.Row property)
target (hdmf.common.table.VectorIndex property)
(hdmf.region.RegionSlicer property)
target_type (hdmf.spec.spec.LinkSpec property)
(hdmf.spec.spec.RefSpec property)
tearDown() (hdmf.testing.testcase.H5RoundTripMixin method)
TermSet (class in hdmf.term_set)
termset (hdmf.term_set.TermSetWrapper property)
TermSetWrapper (class in hdmf.term_set)
test_roundtrip() (hdmf.testing.testcase.H5RoundTripMixin method)
test_roundtrip_export() (hdmf.testing.testcase.H5RoundTripMixin method)
TestCase (class in hdmf.testing.testcase)
to_dataframe() (hdmf.common.alignedtable.AlignedDynamicTable method)
(hdmf.common.resources.HERD method)
(hdmf.common.table.DynamicTable method)
(hdmf.common.table.DynamicTableRegion method)
(hdmf.container.Table method)
to_hierarchical_dataframe() (in module hdmf.common.hierarchicaltable)
to_spmat() (hdmf.common.sparse.CSRMatrix method)
to_uint_array() (in module hdmf.utils)
to_zip() (hdmf.common.resources.HERD method)
todict() (hdmf.common.resources.Entity method)
(hdmf.common.resources.EntityKey method)
(hdmf.common.resources.File method)
(hdmf.common.resources.Key method)
(hdmf.common.resources.Object method)
(hdmf.common.resources.ObjectKey method)
transform() (hdmf.container.Data method)
type_hierarchy() (hdmf.container.AbstractContainer class method)
type_key() (hdmf.spec.spec.BaseStorageSpec class method)
type_map (hdmf.build.manager.BuildManager property)
TypeDoesNotExistError
TypeMap (class in hdmf.build.manager)
types (hdmf.backends.hdf5.h5_utils.AbstractH5TableDataset property)
types_key() (hdmf.spec.namespace.SpecNamespace class method)
TypeSource (class in hdmf.build.manager)
U
unmap() (hdmf.build.objectmapper.ObjectMapper method)
unmatched_builders (hdmf.validate.validator.SpecMatcher property)
UnsupportedOperation
UNVERSIONED (hdmf.spec.namespace.SpecNamespace attribute)
update() (hdmf.utils.LabelledDict method)
V
valid (hdmf.backends.hdf5.h5_utils.H5DataIO property)
(hdmf.data_utils.DataIO property)
valid_primary_dtypes (hdmf.spec.spec.DtypeHelper attribute)
valid_types() (hdmf.validate.validator.ValidatorMap method)
validate() (hdmf.term_set.TermSet method)
(hdmf.testing.testcase.H5RoundTripMixin method)
(hdmf.validate.validator.AttributeValidator method)
(hdmf.validate.validator.BaseStorageValidator method)
(hdmf.validate.validator.DatasetValidator method)
(hdmf.validate.validator.GroupValidator method)
(hdmf.validate.validator.Validator method)
(hdmf.validate.validator.ValidatorMap method)
(in module hdmf.common)
validate_spec() (in module hdmf.testing.validate_spec)
Validator (class in hdmf.validate.validator)
ValidatorMap (class in hdmf.validate.validator)
value (hdmf.spec.spec.AttributeSpec property)
(hdmf.term_set.TermSetWrapper property)
values() (hdmf.build.builders.GroupBuilder method)
VectorData (class in hdmf.common.table)
VectorIndex (class in hdmf.common.table)
version (hdmf.spec.namespace.SpecNamespace property)
view_set (hdmf.term_set.TermSet property)
vmap (hdmf.validate.validator.Validator property)
W
WARNING (hdmf.utils.AllowPositional attribute)
which() (hdmf.container.Table method)
write() (hdmf.backends.hdf5.h5tools.HDF5IO method)
(hdmf.backends.io.HDMFIO method)
write_builder() (hdmf.backends.hdf5.h5tools.HDF5IO method)
(hdmf.backends.io.HDMFIO method)
write_dataset() (hdmf.backends.hdf5.h5tools.HDF5IO method)
write_group() (hdmf.backends.hdf5.h5tools.HDF5IO method)
write_link() (hdmf.backends.hdf5.h5tools.HDF5IO method)
write_namespace() (hdmf.backends.hdf5.h5_utils.H5SpecWriter method)
(hdmf.spec.write.SpecWriter method)
(hdmf.spec.write.YAMLSpecWriter method)
write_spec() (hdmf.backends.hdf5.h5_utils.H5SpecWriter method)
(hdmf.spec.write.SpecWriter method)
(hdmf.spec.write.YAMLSpecWriter method)
WriteStatusTracker (class in hdmf.backends.utils)
Y
YAMLSpecReader (class in hdmf.spec.namespace)
YAMLSpecWriter (class in hdmf.spec.write)
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